Research:

Prevention of Amino Acid Conversion in SILAC Experiments with Embryonic Stem Cells

Sean C. Bendall, Chris Hughes, Morag H. Stewart, Brad Doble, Mickie Bhatia, and Gilles A. Lajoie
Mol Cell Proteomics 2008 7: 1587-1597. First Published on May 16, 2008; doi:10.1074/mcp.M800113-MCP200 [Abstract] [Full Text] [PDF]

GPS 2.0, a Tool to Predict Kinase-specific Phosphorylation Sites in Hierarchy

Yu Xue, Jian Ren, Xinjiao Gao, Changjiang Jin, Longping Wen, and Xuebiao Yao
Mol Cell Proteomics 2008 7: 1598-1608. First Published on May 6, 2008; doi:10.1074/mcp.M700574-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data

Consequences of C₄ Differentiation for Chloroplast Membrane Proteomes in Maize Mesophyll and Bundle Sheath Cells

Wojciech Majeran, Boris Zybailov, A. Jimmy Ytterberg, Jason Dunsmore, Qi Sun, and Klaas J. van Wijk
Mol Cell Proteomics 2008 7: 1609-1638. First Published on May 2, 2008; doi:10.1074/mcp.M800016-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data

Comparative Proteomics Approach to Screening of Potential Diagnostic and Therapeutic Targets for Oral Squamous Cell Carcinoma

Zhi Wang, Lu Jiang, Canhua Huang, Zhengyu Li, Lijuan Chen, Lantu Gou, Ping Chen, Aiping Tong, Minghai Tang, Feng Gao, Jun Shen, Yuanyuan Zhang, Jingping Bai, Min Zhou, Di Miao, and Qianming Chen
Mol Cell Proteomics 2008 7: 1639-1650. First Published on May 4, 2008; doi:10.1074/mcp.M700520-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data

Use of Fluorescence-activated Vesicle Sorting for Isolation of Naked2-associated, Basolaterally Targeted Exocytic Vesicles for Proteomics Analysis

Zheng Cao, Cunxi Li, James N. Higginbotham, Jeffrey L. Franklin, David L. Tabb, Ramona Graves-Deal, Salisha Hill, Kristin Cheek, W. Gray Jerome, Lynne A. Lapierre, James R. Goldenring, Amy-Joan L. Ham, and Robert J. Coffey
Mol Cell Proteomics 2008 7: 1651-1667. First Published on May 25, 2008; doi:10.1074/mcp.M700155-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data

Involvement of Acidic Fibroblast Growth Factor in Spinal Cord Injury Repair Processes Revealed by a Proteomics Approach

Ming-Chu Tsai, Li-Fen Shen, Huai-Sheng Kuo, Henrich Cheng, and Kin-Fu Chak
Mol Cell Proteomics 2008 7: 1668-1687. First Published on May 14, 2008; doi:10.1074/mcp.M800076-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data

Transgenic, Fluorescent Leishmania mexicana Allow Direct Analysis of the Proteome of Intracellular Amastigotes

Daniel Paape, Christoph Lippuner, Monika Schmid, Renate Ackermann, Martin E. Barrios-Llerena, Ursula Zimny-Arndt, Volker Brinkmann, Benjamin Arndt, Klaus Peter Pleissner, Peter R. Jungblut, and Toni Aebischer
Mol Cell Proteomics 2008 7: 1688-1701. First Published on May 12, 2008; doi:10.1074/mcp.M700343-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data

Robust and Sensitive iTRAQ Quantification on an LTQ Orbitrap Mass Spectrometer

Marcus Bantscheff, Markus Boesche, Dirk Eberhard, Toby Matthieson, Gavain Sweetman, and Bernhard Kuster
Mol Cell Proteomics 2008 7: 1702-1713. First Published on May 29, 2008; doi:10.1074/mcp.M800029-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data

Phosphorylation and Kinetics of Mammalian Cytochrome c Oxidase

Stefan Helling, Sebastian Vogt, Annika Rhiel, Rabia Ramzan, Li Wen, Katrin Marcus, and Bernhard Kadenbach
Mol Cell Proteomics 2008 7: 1714-1724. First Published on June 9, 2008; doi:10.1074/mcp.M800137-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data

Integration of Metabolomic and Proteomic Phenotypes: Analysis of Data Covariance Dissects Starch and RFO Metabolism from Low and High Temperature Compensation Response in Arabidopsis Thaliana

Stefanie Wienkoop, Katja Morgenthal, Florian Wolschin, Matthias Scholz, Joachim Selbig, and Wolfram Weckwerth
Mol Cell Proteomics 2008 7: 1725-1736. First Published on April 28, 2008; doi:10.1074/mcp.M700273-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data

Comparative Studies of Early Liver Dysfunction in Senescence-accelerated Mouse Using Mitochondrial Proteomics Approaches

Yashu Liu, Jintang He, Shaoyi Ji, Qingsong Wang, Hai Pu, Tingting Jiang, Lingyao Meng, Xiuwei Yang, and Jianguo Ji
Mol Cell Proteomics 2008 7: 1737-1747. First Published on May 29, 2008; doi:10.1074/mcp.M800109-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data

Generalized Method for Probability-based Peptide and Protein Identification from Tandem Mass Spectrometry Data and Sequence Database Searching

Antonio Ramos-Fernández, Alberto Paradela, Rosana Navajas, and Juan Pablo Albar
Mol Cell Proteomics 2008 7: 1748-1754. First Published on May 31, 2008; doi:10.1074/mcp.M800122-MCP200 [Abstract] [Full Text] [PDF]

Automated Online Sequential Isotope Labeling for Protein Quantitation Applied to Proteasome Tissue-specific Diversity

Reinout Raijmakers, Celia R. Berkers, Annemieke de Jong, Huib Ovaa, Albert J. R. Heck, and Shabaz Mohammed
Mol Cell Proteomics 2008 7: 1755-1762. First Published on June 4, 2008; doi:10.1074/mcp.M800093-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data

Investigation of Protein-tyrosine Phosphatase 1B Function by Quantitative Proteomics

Philipp Mertins, H. Christian Eberl, Jörg Renkawitz, Jesper V. Olsen, Michel L. Tremblay, Matthias Mann, Axel Ullrich, and Henrik Daub
Mol Cell Proteomics 2008 7: 1763-1777. First Published on May 31, 2008; doi:10.1074/mcp.M800196-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data

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Mol Cell Proteomics 2008 7: 1778. [Full Text] [PDF]

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