28 August 2008

Joohyun Lee, Jian Feng, Kimberly B. Campbell, Brian E. Scheffler, Wesley M. Garrett, Sandra Thibivilliers, Gary Stacey, Daniel Q. Naiman, Mark L. Tucker, M. A. Pastor-Corrales, and Bret Cooper

Quantitative proteomic analysis of bean plants infected by a virulent and avirulent obligate rust fungus
MCP published August 28, 2008, 10.1074/mcp.M800156-MCP200 [Abstract] [Accepted Manuscript] [Supplemental Data]  

26 August 2008

Zhongyi Cheng, Yi Tang, Yue Chen, Sungchan Kim, Huadong Liu, Shawn S.C. Li, Wei Gu, and Yingming Zhao

Molecular characterization of propionyllysines in non-histone proteins
MCP published August 26, 2008, 10.1074/mcp.M800224-MCP200 [Abstract] [Accepted Manuscript] [Supplemental Data]  

Jason Mulvenna, Brett Hamilton, Shivashankar Nagaraj, Danielle Smyth, Alex Loukas, and Jeffrey Gorman

Proteomic analysis of the excretory/secretory component of the blood-feeding stage of the hookworm, Ancylostoma caninum
MCP published August 26, 2008, 10.1074/mcp.M800206-MCP200 [Abstract] [Accepted Manuscript] [Supplemental Data]  

Sandra Pierre, Christian Maeurer, Ovidiu Coste, Wiebke Becker, Achim Schmidtko, Sabrina Holland, Claus Wittpoth, Gerd Geisslinger, and Klaus Scholich

Toponomic analysis of functional interactions of the ubiquitin ligase PAM during spinal nociceptive processing
MCP published August 26, 2008, 10.1074/mcp.M800201-MCP200 [Abstract] [Accepted Manuscript] [Supplemental Data]  

23 August 2008

Junmei Zhang, Robert Sprung, Jimin Pei, Xiaohong Tan, Sungchan Kim, Heng Zhu, Chuan-Fa Liu, Nick V. Grishin, and Yingming Zhao

Lysine acetylation is a highly abundant and evolutionarily conserved modification in E. coli
MCP published August 23, 2008, 10.1074/mcp.M800187-MCP200 [Abstract] [Accepted Manuscript] [Supplemental Data]  

22 August 2008

Rui Liu, Zhenjun Li, Shujun Bai, Haiyuan Zhang, Minghai Tang, Yunlong Lei, Lijuan Chen, Shufang Liang, Ying-lan Zhao, Yuquan Wei, and Canhua Huang

Mechanism of cancer cell adaptation to metabolic stress: proteomics identification of a novel thyroid hormone mediated gastric carcinogenic signaling pathway
MCP published August 22, 2008, 10.1074/mcp.M800195-MCP200 [Abstract] [Accepted Manuscript]  

20 August 2008

Diliana Dancheva Simeonova, Iuliana Susnea, Adrian Moise, Bernhard Schink, and Michael Przybylski

“Unknown-genome”-proteomics: A new NAD(P)- dependent epimerase/dehydratase revealed by N-terminal sequencing, inverted PCR and high resolution mass spectrometry
MCP published August 20, 2008, 10.1074/mcp.M800242-MCP200 [Abstract] [Accepted Manuscript]  

Florian A.R. Kaffarnik, Alexandra M.E. Jones, John P. Rathjen, and Scott C. Peck

Effector proteins of the bacterial pathogen Pseudomonas syringae alter the extracellular proteome of the host plant, Arabidopsis thaliana
MCP published August 20, 2008, 10.1074/mcp.M800043-MCP200 [Abstract] [Accepted Manuscript] [Supplemental Data]  

16 August 2008

Stanley M. Stevens . Jr, Katalin Prokai-Tatrai, and Laszlo Prokai

Factors that contribute to the misidentification of tyrosine nitration by shotgun proteomics
MCP published August 16, 2008, 10.1074/mcp.M800065-MCP200 [Abstract] [Accepted Manuscript] [Supplemental Data]  

14 August 2008

Sangtae Kim, Nitin Gupta, Nuno Bandeira, and Pavel A. Pevzner

Spectral dictionaries: Integrating de novo peptide sequencing with database search of tandem mass spectra
MCP published August 14, 2008, 10.1074/mcp.M800103-MCP200 [Abstract] [Accepted Manuscript] [Supplemental Data]  

12 August 2008

Jan-Jonas Filén, Sanna Filén, Robert Moulder, Soile Tuomela, Helena Ahlfors, Anne West, Petri Kouvonen, Suvi Kantola, Mari Björkman, Mikko Katajamaa, Omid Rasool, Tuula A. Nyman, and Riitta Lahesmaa

Quantitative proteomics reveals GIMAP family proteins 1 and 4 to be differentially regulated during human T helper cell differentiation
MCP published August 12, 2008, 10.1074/mcp.M800139-MCP200 [Abstract] [Accepted Manuscript] [Supplemental Data]  

Seungjin Na, Jaeho Jeong, Heejin Park, Kong-Joo Lee, and Eunok Paek

Unrestrictive identification of multiple post-translational modifications from tandem mass spectrometry using an error-tolerant algorithm based on an extended sequence tag approach
MCP published August 12, 2008, 10.1074/mcp.M800101-MCP200 [Abstract] [Accepted Manuscript] [Supplemental Data]  

11 August 2008

Atsushi Kuno, Yukinari Kato, Atsushi Matsuda, Mika Kato Kaneko, Hiromi Ito, Koh Amano, Yasunori Chiba, Hisashi Narimatsu, and Jun Hirabayashi

Focused differential glycan analysis with the platform antibody-assisted lectin profiling (ALP) for glycan-related biomarker verification
MCP published August 11, 2008, 10.1074/mcp.M800308-MCP200 [Abstract] [Accepted Manuscript] [Supplemental Data]  

6 August 2008

Amy J. VanMeter, Adrianna S. Rodriguez, Elise D. Bowman, Curtis C. Harris, Jianghong Deng, Valerie S. Calvert, Alessandra Silvestri, Claudia Fredolini, Vikas Chandhoke, Emanuel F. Petricoin III, Lance A. Liotta, and Virginia Espina

LCM and protein microarray analysis of human NSCLC: Differential EGFR phosphorylation events associated with mutated EGFR compared to wild type
MCP published August 6, 2008, 10.1074/mcp.M800204-MCP200 [Abstract] [Accepted Manuscript] [Supplemental Data]  

Anders Riis Kristensen, Soeren Schandorff, Maria Hoyer-Hansen, Maria Overbeck Nielsen, Marja Jaattela, Joern Dengjel, and Jens S. Andersen

Ordered organelle degradation during starvation-induced autophagy
MCP published August 6, 2008, 10.1074/mcp.M800184-MCP200 [Abstract] [Accepted Manuscript]  

5 August 2008

Katherine G. Zulak, Morgan F. Khan, Joenel Alcantara, David C. Schriemer, and Peter J. Facchini

Plant defense responses in opium poppy cell cultures revealed by liquid chromatography-tandem mass spectrometry proteomics
MCP published August 5, 2008, 10.1074/mcp.M800211-MCP200 [Abstract] [Accepted Manuscript] [Supplemental Data]  

4 August 2008

Kerstin Stingl, Kristine Schauer, Chantal Ecobichon, Agnès Labigne, Pascal Lenormand, Jean-Claude Rousselle, Abdelkader Namane, and Hilde de Reuse

In vivo interactome of Helicobacter pylori urease revealed by tandem affinity purification
MCP published August 4, 2008, 10.1074/mcp.M800160-MCP200 [Abstract] [Accepted Manuscript] [Supplemental Data]  

Xuequn Chen, Peter J. Ulintz, Eric S. Simon, John A. Williams, and Philip C. Andrews

Global topology analysis of pancreatic zymogen granule membrane proteins
MCP published August 4, 2008, 10.1074/mcp.M700575-MCP200 [Abstract] [Accepted Manuscript] [Supplemental Data]  

Anne-Sofie Schrohl, Sidse W�rtz, Hans Jørgen Nielsen, Fred C.G.J Sweep, and Nils Br�nner

Banking of biological fluids for studies of protein biomarkers
MCP published August 4, 2008, 10.1074/mcp.R800010-MCP200 [Abstract] [Accepted Manuscript]  

3 August 2008

Christopher G. Lausted, Zhiyuan Hu, and Leroy E. Hood

Quantitative serum proteomics from surface plasmon resonance imaging
MCP published August 3, 2008, 10.1074/mcp.M800121-MCP200 [Abstract] [Accepted Manuscript]  

2 August 2008

Ben-Bo Gao, Lisa Stuart, and Edward P. Feener

Label-free quantitative analysis of 1D-PAGE LC/MS/MS proteome: Application on angiotensin II stimulated smooth muscle cells secretome
MCP published August 2, 2008, 10.1074/mcp.M800104-MCP200 [Abstract] [Accepted Manuscript] [Supplemental Data]  

1 August 2008

Ulrich Kruse, Marcus Bantscheff, Gerard Drewes, and Carsten Hopf

Chemical and pathway proteomics: Powerful tools for oncology drug discovery and personalized health care
MCP published August 1, 2008, 10.1074/mcp.R800006-MCP200 [Abstract] [Accepted Manuscript]  

31 July 2008

Laura Lovato, Riccardo Cianti, Beatrice Gini, Silvia Marconi, Laura Bianchi, Alessandro Armini, Elena Anghileri, Francesca Locatelli, Francesco Paoletti, Diego Franciotta, Luca Bini, and Bruno Bonetti

Transketolase and CNPase I are specifically recognized by IgG autoantibodies in multiple sclerosis patients
MCP published July 31, 2008, 10.1074/mcp.M700277-MCP200 [Abstract] [Accepted Manuscript] [Supplemental Data]  

Lisa Berglund, Erik Bj�rling, Per Oksvold, Linn Fagerberg, Anna Asplund, Cristina Al-Khalili Szigyarto, Anja Persson, Jenny Ottosson, Henrik Wern�rus, Peter Nilsson, Emma Lundberg, Åsa Sivertsson, Sanjay Navani, Kenneth Wester, Caroline Kampf, Sophia Hober, Fredrik Pont�n, and Mathias Uhl�n

A gene-centric human protein atlas for expression profiles based on antibodies
MCP published July 31, 2008, 10.1074/mcp.R800013-MCP200 [Abstract] [Accepted Manuscript]  

30 July 2008

Alistair V.G. Edwards, Melanie Y. White, and Stuart J. Cordwell

The role of proteomics in clinical cardiovascular biomarker discovery
MCP published July 30, 2008, 10.1074/mcp.R800007-MCP200 [Abstract] [Accepted Manuscript]  

Stéphane Decramer, Anne Gonzalez de Peredo, Benjamin Breuil, Harald Mischak, Bernard Monsarrat, Jean-Loup Bascands, and Joost P. Schanstra

Urine in clinical proteomics
MCP published July 30, 2008, 10.1074/mcp.R800001-MCP200 [Abstract] [Accepted Manuscript]  

Kenny Helsens, Evy Timmerman, Joël Vandekerckhove, Kris Gevaert, and Lennart Martens

Peptizer: A tool for assessing false positive peptide identifications and manually validating selected results
MCP published July 30, 2008, 10.1074/mcp.M800082-MCP200 [Abstract] [Accepted Manuscript] [Supplemental Data]  

Virginia A. Espina, Kirsten H. Edmiston, Michael Heiby, Mariaelena Pierobon, Manuela Sciro, Barbara Merritt, Stacey Banks, Jianghong Deng, Amy J. VanMeter, David H. Geho, Lucia Pastore, Joel Sennesh, Emanuel F. Petricoin III, and Lance A. Liotta

A portrait of tissue phosphoprotein stability in the clinical tissue procurement process
MCP published July 30, 2008, 10.1074/mcp.M700596-MCP200 [Abstract] [Accepted Manuscript]  

Mohamed Lamkanfi, Thirumala-Devi Kanneganti, Petra Van Damme, Tom Vanden Berghe, Isabel Vanoverberghe, Joël Vandekerckhove, Peter Vandenabeele, Kris Gevaert, and Gabriel Núñez

Targeted peptide-centric proteomics reveals caspase-7 as a substrate of the caspase-1 inflammasomes
MCP published July 30, 2008, 10.1074/mcp.M800132-MCP200 [Abstract] [Accepted Manuscript] [Supplemental Data]  

29 July 2008

Erik Björling and Mathias Uhlen

Antibodypedia – a portal for sharing antibody and antigen validation data
MCP published July 29, 2008, 10.1074/mcp.M800264-MCP200 [Abstract] [Accepted Manuscript]  

John M. Koomen, Eric B. Haura, Gerold Bepler, Rebecca Sutphen, Elizabeth R. Remily-Wood, Kaaron Benson, Mohamad Hussein, Lori A. Hazlehurst, Timothy J. Yeatman, Lynne T. Hildreth, Thomas A. Sellers, Paul B. Jacobsen, David A. Fenstermacher, and William S. Dalton

Proteomic contributions to personalized cancer care
MCP published July 29, 2008, 10.1074/mcp.R800002-MCP200 [Abstract] [Accepted Manuscript]  

24 July 2008

Emília Szájli, Tamás Fehér, and Katalin F. Medzihradszky

Investigating the quantitative nature of MALDI-TOF MS
MCP published July 24, 2008, 10.1074/mcp.M800108-MCP200 [Abstract] [Accepted Manuscript] [Supplemental Data]  

Robert J. Chalkley, Peter R. Baker, Katalin F. Medzihradszky, Aenoch J. Lynn, and A. L. Burlingame

In-depth analysis of tandem mass spectrometry data from disparate instrument types
MCP published July 24, 2008, 10.1074/mcp.M800021-MCP200 [Abstract] [Accepted Manuscript] [Supplemental Data]  

20 July 2008

Hyungwon Choi, Damian Fermin, and Alexey I. Nesvizhskii

Significance analysis of spectral count data in label-free shotgun proteomics
MCP published July 20, 2008, 10.1074/mcp.M800203-MCP200 [Abstract] [Accepted Manuscript] [Supplemental Data]  

18 July 2008

Dan B. Martin, Ted Holzman, Damon May, Amelia Peterson, Ashley Eastham, Jimmy Eng, and Martin McIntosh

MRMer: An interactive open-source and cross-platform system for data extraction and visualization of multiple reaction monitoring experiments
MCP published July 18, 2008, 10.1074/mcp.M700504-MCP200 [Abstract] [Accepted Manuscript] [Supplemental Data]  

16 July 2008

Julio E. Celis, Pavel Gromov, Teresa Cabezon, Jose M. A. Moreira, Esbern Friis, Karin Jirstrom, Antonio Llombart-Bosch, Vera Timmermans-Wielenga, Fritz Rank, and Irina Gromova

15–PGDH expression alone or in combination with ACSM1 defines a subgroup of the apocrine molecular subtype of breast carcinomae
MCP published July 16, 2008, 10.1074/mcp.R800011-MCP200 [Abstract] [Accepted Manuscript] [Supplemental Data]  

15 July 2008

Samuel Bertin, Michel Samson, Catherine Pons, Jean-Marie Guigonis, Adolfo Gavelli, Patrick Baque, Nicole Brossette, Sophie Pagnotta, Jean-Ehrland Ricci, and Valérie Pierrefite-Carle

Comparative proteomics study reveals that bacterial CpG motifs induce tumor cell autophagy in vitro and in vivo
MCP published July 15, 2008, 10.1074/mcp.M800100-MCP200 [Abstract] [Accepted Manuscript] [Supplemental Data]  

Wei-Jun Qian, David T. Kaleta, Brianne O. Petritis, Hongliang Jiang, Tao Liu, Xu Zhang, Heather M. Mottaz, Susan M. Varnum, David G. Camp II, Lei Huang, Xiangming Fang, Wei-Wei Zhang, and Richard D. Smith

Enhanced detection of low abundant human plasma proteins using a tandem IgY12-supermix immunoaffinity separation strategy
MCP published July 15, 2008, 10.1074/mcp.M800008-MCP200 [Abstract] [Accepted Manuscript] [Supplemental Data]  

Vanessa Dehennaut, Marie-Christine Slomianny, Adeline Page, Anne-Sophie Vercoutter-Edouart, Catherine Jessus, Jean-Claude Michalski, Jean-Pierre Vilain, Jean-François Bodart, and Tony Lefebvre

Identification of structural and functional O-GlcNAc-bearing proteins in Xenopus laevis oocyte
MCP published July 15, 2008, 10.1074/mcp.M700494-MCP200 [Abstract] [Accepted Manuscript] [Supplemental Data]  

13 July 2008

Stephen F. Kingsmore, Neil Kennedy, Henry L. Halliday, Jennifer C. Van Velkinburgh, Shengiang Zhong, Vanessa Gabriel, Judith Grant, William D. Beavis, Velizar T. Tchernev, Lorah Perlee, Serguei Lejnine, Brian Grimwade, Martin Sorrette, and J. David M. Edgar

Identification of diagnostic biomarkers for infection in premature neonates
MCP published July 13, 2008, 10.1074/mcp.M800175-MCP200 [Abstract] [Accepted Manuscript]  

12 July 2008

Kourosh Zolghadr, Oliver Mortusewicz, Ulrich Rothbauer, Regina Kleinhans, Heike Goehler, Erich E. Wanker, M. Cristina Cardoso, and Heinrich Leonhardt

A fluorescent two-hybrid (F2H) assay for direct visualization of protein interactions in living cells
MCP published July 12, 2008, 10.1074/mcp.M700548-MCP200 [Abstract] [Accepted Manuscript] [Supplemental Data]  

Anne-Aurélie Raymond, Anne Gonzalez de Peredo, Alexandre Stella, Akemi Ishida-Yamamoto, David Bouyssie, Guy Serre, Bernard Monsarrat, and Michel Simon

Lamellar bodies of human epidermis: Proteomic characterization by high-throughput mass spectrometry, possible involvement of CLIP-170 in their trafficking/secretion
MCP published July 12, 2008, 10.1074/mcp.M700334-MCP200 [Abstract] [Accepted Manuscript] [Supplemental Data]  

9 July 2008

Marta Sanz-García, Inmaculada López-Sánchez, and Pedro A. Lazo

Proteomic identification of nuclear Ran GTPase as an inhibitor of human VRK1 and VRK2 (vaccinia-related kinase) activities
MCP published July 9, 2008, 10.1074/mcp.M700586-MCP200 [Abstract] [Accepted Manuscript] [Supplemental Data]  

Melinda A. McFarland, Christopher E. Ellis, Sanford P. Markey, and Robert L. Nussbaum

Proteomic analysis identifies phosphorylation-dependent a-synuclein protein interactions
MCP published July 9, 2008, 10.1074/mcp.M800116-MCP200 [Abstract] [Accepted Manuscript] [Supplemental Data]  

Florence Roux-Dalvai, Anne Gonzalez de Peredo, Carolina Simo, Luc Guerrier, David Bouyssié, Alberto Zanella, Attilio Citterio, Odile Burlet-Schiltz, Egisto Boschetti, Pier Giorgio Righetti, and Bernard Monsarrat

Extensive analysis of the cytoplasmic proteome of human erythrocytes using the peptide ligand library technology and advanced mass spectrometry
MCP published July 9, 2008, 10.1074/mcp.M800037-MCP200 [Abstract] [Accepted Manuscript] [Supplemental Data]  

4 July 2008

Jenny A Cappuccio, Craig D Blanchette, Todd A Sulchek, Erin S Arroyo, Joel M Kralj, Angela K Hinz, Edward A Kuhn, Brett A Chromy, Brent W Segelke, Kenneth J Rothschild, Julia Fletcher, Federico Katzen, Todd C Peterson, Wieslaw A Kudlicki, Graham Bench, Paul D Hoeprich, and Matthew A Coleman

Cell-free co-expression of functional membrane proteins and apolipoprotein forming soluble nanolipoprotein particles
MCP published July 4, 2008, 10.1074/mcp.M800191-MCP200 [Abstract] [Accepted Manuscript]  

2 July 2008

Alain Doucet, Georgina S. Butler, David Rodríguez, Anna Prudova, and Christopher M. Overall

Quantitative degradomics analysis of proteolytic post-translational modifications of the cancer proteome
MCP published July 2, 2008, 10.1074/mcp.R800012-MCP200 [Abstract] [Accepted Manuscript]  

Diana R. Arnett, Jennifer L. Jennings, David L. Tabb, Andrew J. Link, and Peter Anthony Weil

A proteomic analysis of yeast Mot1p protein-protein associations: insights into mechanism
MCP published July 2, 2008, 10.1074/mcp.M800221-MCP200 [Abstract] [Accepted Manuscript] [Supplemental Data]  

Danmei Xu, Naoko Suenaga, Mariola J. Edelmann, Rafael Fridman, Ruth J. Muschel, and Benedikt M. Kessler

Novel MMP-9 substrates in cancer cells revealed by a label-free quantitative proteomics approach
MCP published July 2, 2008, 10.1074/mcp.M800095-MCP200 [Abstract] [Accepted Manuscript] [Supplemental Data]  

27 June 2008

Angela M. Kaindl, Andrea Koppelstaetter, Grit Nebrich, Janine Stuwe, Marco Sifringer, Claus Zabel, Joachim Klose, and Chrysanthy Ikonomidou

Brief alteration of NMDA or GABAA receptor mediated neurotransmission has long-term effects on the developing cerebral cortex
MCP published June 27, 2008, 10.1074/mcp.M800030-MCP200 [Abstract] [Accepted Manuscript] [Supplemental Data]  

25 June 2008

Haojie Lu, Chenggong Zong, Yueju Wang, Glen W Young, Ning Deng, Pete Souda, Xiaohai Li, Julian Whitelegge, Oliver Drews, Peng-yuan Yang, and Peipei Ping

Revealing the dynamics of 20S proteasome phosphoproteome: A combined CID and ETD approach
MCP published June 25, 2008, 10.1074/mcp.M800064-MCP200 [Abstract] [Accepted Manuscript] [Supplemental Data]  

23 June 2008

Suresh Mathivanan and Akhilesh Pandey

Human proteinpedia as a resource for clinical proteomics
MCP published June 23, 2008, 10.1074/mcp.R800008-MCP200 [Abstract] [Accepted Manuscript]  

Jiusheng Yan, Jesper V. Olsen, Kang-Sik Park, Weiyan Li, Wolfgang Bildl, Uwe Schulte, Richard W. Aldrich, Bernd Fakler, and James S. Trimmer

Profiling the phospho-status of the BKca channel a subunit in rat brain reveals unexpected patterns and complexity
MCP published June 23, 2008, 10.1074/mcp.M800063-MCP200 [Abstract] [Accepted Manuscript] [Supplemental Data]  

18 June 2008

Joost Schimmel, Katja M. Larsen, Ivan Matic, Martijn van Hagen, Jürgen Cox, Matthias Mann, Jens S. Andersen,